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UID:pretalx-2025-73MZUC@cfp.openondemand.org
DTSTART;TZID=EST:20250319T143000
DTEND;TZID=EST:20250319T145500
DESCRIPTION:Tufts University hosts a vibrant bioinformatics community\, man
 y of whom are new to using the linux command line for high-performance com
 puting (HPC). Open OnDemand (OOD) simplifies access to HPC resources with 
 its user-friendly web interface. At Tufts\, we have deployed over 30 bioin
 formatics applications and nf-core pipelines on OOD\, including custom RSt
 udio servers tailored for bioinformatics. The nf-core pipelines enable use
 rs to run complex workflows with ease. Here\, we share our experiences in 
 building a custom RStudio server container for bioinformatics\, deploying 
 containerized applications as OOD apps\, and transforming the complex comm
 and-line interfaces of nf-core pipelines into user-friendly OOD web applic
 ations.
DTSTAMP:20260607T234004Z
LOCATION:Tsai Auditorium (CGIS S010)
SUMMARY:Containerized bioinformatics applications and pipelines on Open OnD
 emand - Yucheng Zhang [Tufts University]
URL:https://cfp.openondemand.org/2025/talk/73MZUC/
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